If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ), 'gf_id' => 'HOM05D000918', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000918' ), 'data_identifier' => 'HOM05D000918', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000918', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '655', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p05810' => 'bna', 'A06p41310' => 'bna', 'A07p12020' => 'bna', 'A07p20520' => 'bna', 'A08p09930' => 'bna', 'A08p26470' => 'bna', 'A08p34600' => 'bna', 'A09p03360' => 'bna', 'A10p25100' => 'bna', 'Aa31LG1G5680' => 'aar', 'Aa31LG2G5330' => 'aar', 'Aa31LG3G14560' => 'aar', 'Aa31LG9G890' => 'aar', 'Aa31sc373G20' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1631' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.5494' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2695' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2225' => 'aag', 'Actinidia05943' => 'ach', 'Actinidia07870' => 'ach', 'Actinidia08021' => 'ach', 'Actinidia08050' => 'ach', 'Actinidia08308' => 'ach', 'Actinidia09623' => 'ach', 'Actinidia09791' => 'ach', 'Actinidia09793' => 'ach', 'Actinidia16887' => 'ach', 'Actinidia25062' => 'ach', 'Actinidia25063' => 'ach', 'Actinidia27545' => 'ach', 'Actinidia27546' => 'ach', 'Actinidia35504' => 'ach', 'Actinidia36167' => 'ach', 'Actinidia39794' => 'ach', 'Ah.01g002600' => 'amhyb', 'Ah.03g135930' => 'amhyb', 'Ah.04g163530' => 'amhyb', 'Ah.06g187330' => 'amhyb', 'AL1G19940' => 'aly', 'AL1G40640' => 'aly', 'AL5G16530' => 'aly', 'AL5G22010' => 'aly', 'AL6G23710' => 'aly', 'AL7G44680' => 'aly', 'AL7G48960' => 'aly', 'Aqoxy166s001' => 'aox', 'Aqoxy1G04234' => 'aox', 'Aqoxy2G02565' => 'aox', 'Aqoxy2G02596' => 'aox', 'Aqoxy2G02600' => 'aox', 'Aqoxy3G01437' => 'aox', 'Aqoxy5G03279' => 'aox', 'Aqoxy61s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.50GAHB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.74FNJK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9E7XBZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8S0CD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BW68TF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EB7VHI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EMYR7K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GQE9FA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J6J42Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJ9LSS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q1RPKB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R0K9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RAR9LN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SV13L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UMN62Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VZQ4XE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WB3DE2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X3SUZV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XC1VLW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z2Z89S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z87PDN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZHN2U2' => 'arhy', 'AT1G09420' => 'ath', 'AT1G24280' => 'ath', 'AT3G27300' => 'ath', 'AT5G13110' => 'ath', 'AT5G35790' => 'ath', 'AT5G40760' => 'ath', 'ATR0582G210' => 'atr', 'ATR0693G155' => 'atr', 'ATR0824G262' => 'atr', 'ATR0827G139' => 'atr', 'Atru.chr11.2372' => 'acertr', 'Atru.chr12.1619_Atru.chr12.1620' => 'acertr', 'Atru.chr6.2488' => 'acertr', 'Atru.chr6.3381' => 'acertr', 'Atru.chr6.3382' => 'acertr', 'Atru.chr6.3400' => 'acertr', 'AUR62000441' => 'cqu', 'AUR62005655' => 'cqu', 'AUR62006786' => 'cqu', 'AUR62015013' => 'cqu', 'AUR62018096' => 'cqu', 'AUR62028898' => 'cqu', 'AUR62029100' => 'cqu', 'AUR62031998' => 'cqu', 'BcaB01g05376' => 'bca', 'BcaB02g07928' => 'bca', 'BcaB03g12066' => 'bca', 'BcaB03g13291' => 'bca', 'BcaB03g13998' => 'bca', 'BcaB04g18019' => 'bca', 'BcaB04g19434' => 'bca', 'BcaB07g30537' => 'bca', 'BcaC01g01629' => 'bca', 'BcaC04g19149' => 'bca', 'BcaC04g19151' => 'bca', 'BcaC04g23907' => 'bca', 'BcaC06g31005' => 'bca', 'BcaC06g33834' => 'bca', 'BcaC06g35276' => 'bca', 'BcaC07g37649' => 'bca', 'BcaC07g38498' => 'bca', 'BcaC08g44486' => 'bca', 'BolC3t13183H' => 'bol', 'BolC3t19651H' => 'bol', 'BolC6t37132H' => 'bol', 'BolC7t42302H' => 'bol', 'BolC7t44151H' => 'bol', 'BolC8t48021H' => 'bol', 'BolC8t48909H' => 'bol', 'BolC9t53278H' => 'bol', 'BolC9t59236H' => 'bol', 'BraA03t09920Z' => 'bra', 'BraA06t27056Z' => 'bra', 'BraA07t28988Z' => 'bra', 'BraA07t29743Z' => 'bra', 'BraA08t32987Z' => 'bra', 'BraA08t34599Z' => 'bra', 'BraA08t35370Z' => 'bra', 'BraA09t35974Z' => 'bra', 'BraA10t44571Z' => 'bra', 'C03p06760' => 'bna', 'C03p73570' => 'bna', 'C06p19370' => 'bna', 'C07p17960' => 'bna', 'C07p36350' => 'bna', 'C08p12740' => 'bna', 'C08p12780' => 'bna', 'C09p03570' => 'bna', 'C09p63990' => 'bna', 'CAN.G1374.4' => 'can', 'CAN.G1751.6' => 'can', 'CAN.G177.3' => 'can', 'CAN.G473.67' => 'can', 'CAN.G734.2' => 'can', 'CANSAT11G2055' => 'cansat', 'CANSAT54G2864' => 'cansat', 'CANSAT64G0619' => 'cansat', 'CANSAT64G2427' => 'cansat', 'CARHR009380' => 'chi', 'CARHR026800' => 'chi', 'CARHR148580' => 'chi', 'CARHR200360' => 'chi', 'CARHR213760' => 'chi', 'CARHR216770' => 'chi', 'Carub.0001s0876' => 'cru', 'Carub.0001s2578' => 'cru', 'Carub.0005s0557' => 'cru', 'Carub.0006s1128' => 'cru', 'Carub.0007s3158' => 'cru', 'Carub.0007s3473' => 'cru', 'Ca_03853_v3' => 'car', 'Ca_04406_v3' => 'car', 'Ca_07137_v3' => 'car', 'Ca_09284_v3' => 'car', 'Ca_23285_v3' => 'car', 'CBR_g18744' => 'cbr', 'CBR_g18745' => 'cbr', 'CBR_g36922' => 'cbr', 'CBR_g40141' => 'cbr', 'Cc00_g11480' => 'ccan', 'Cc02_g35460' => 'ccan', 'Cc02_g35470' => 'ccan', 'Cc03_g11380' => 'ccan', 'Cc03_g11400' => 'ccan', 'Cc07_g00420' => 'ccan', 'Cc11_g17260' => 'ccan', 'CDE02G0462' => 'cde', 'CDE04G1461' => 'cde', 'CDE05G1405' => 'cde', 'CDE08G0651' => 'cde', 'CDE08G0736' => 'cde', 'CDE09G1386' => 'cde', 'Cfa006735' => 'cfa', 'Cfa007276' => 'cfa', 'Cfa009392' => 'cfa', 'Cfa014223' => 'cfa', 'Ciclev10013376m.g' => 'ccl', 'Ciclev10015153m.g' => 'ccl', 'CiPaw.03G050600' => 'cil', 'CiPaw.03G281100' => 'cil', 'CiPaw.04G033200' => 'cil', 'CiPaw.04G197300' => 'cil', 'CiPaw.05G106600' => 'cil', 'CiPaw.06G105700' => 'cil', 'CiPaw.07G033700' => 'cil', 'ClCG02G014700' => 'cla', 'ClCG04G001430' => 'cla', 'ClCG04G002720' => 'cla', 'COL.COLO4_05493' => 'col', 'COL.COLO4_06831' => 'col', 'COL.COLO4_33340' => 'col', 'Cpa.g.sc130.39' => 'cpa', 'Cpa.g.sc211.24' => 'cpa', 'Cpa.g.sc48.205' => 'cpa', 'Cpa.g.sc99.51' => 'cpa', 'Cre08.g378150' => 'cre', 'Cre17.g725550' => 'cre', 'CsaV3_2G007280' => 'csa', 'CsaV3_4G029990' => 'csa', 'CsaV3_4G031080' => 'csa', 'CSS0004231' => 'camsi', 'CSS0004452' => 'camsi', 'CSS0008373' => 'camsi', 'CSS0012158' => 'camsi', 'CSS0014766' => 'camsi', 'CSS0016743' => 'camsi', 'CSS0028610' => 'camsi', 'CSS0034187' => 'camsi', 'CSS0047278' => 'camsi', 'CSS0050169' => 'camsi', 'DCAR_002962' => 'dca', 'DCAR_003679' => 'dca', 'DCAR_011291' => 'dca', 'DCAR_015077' => 'dca', 'DCAR_019248' => 'dca', 'DCAR_024658' => 'dca', 'Dinv09008' => 'din', 'Dinv11696' => 'din', 'Dinv17592' => 'din', 'Dinv21292' => 'din', 'Dinv21301' => 'din', 'Dinv21302' => 'din', 'Dinv24487' => 'din', 'Dinv25692' => 'din', 'Dinv33382' => 'din', 'Duzib106G1699' => 'dzi', 'Duzib138G1628' => 'dzi', 'Duzib147G0056' => 'dzi', 'Duzib177G0219' => 'dzi', 'Duzib187G1278' => 'dzi', 'Duzib251G0945' => 'dzi', 'ECA232G0045' => 'eca', 'ECA232G2223' => 'eca', 'ECA236G0284' => 'eca', 'ECA246G1938' => 'eca', 'EL10Ac1g01553' => 'bvu', 'EL10Ac4g09520' => 'bvu', 'EL10Ac6g13541' => 'bvu', 'EL10Ac9g22686' => 'bvu', 'Eucgr.B03528' => 'egr', 'Eucgr.H00874' => 'egr', 'Eucgr.H01306' => 'egr', 'Eucgr.H04609' => 'egr', 'Eucgr.I01691' => 'egr', 'Eucgr.K00618' => 'egr', 'FAN02G0935' => 'fan', 'FAN02G2872' => 'fan', 'FAN02G3083' => 'fan', 'FAN02G3528' => 'fan', 'FAN03G2017' => 'fan', 'FAN04G0266' => 'fan', 'FAN05G0653' => 'fan', 'FAN05G1724' => 'fan', 'FAN05G5286' => 'fan', 'FAN05G5446' => 'fan', 'FAN07G0220' => 'fan', 'FAN08G1496' => 'fan', 'FAN08G3220' => 'fan', 'FAN09G1412' => 'fan', 'FAN09G1894' => 'fan', 'FAN09G2700' => 'fan', 'FAN09G4903' => 'fan', 'FAN12G3435' => 'fan', 'FAN12G4187' => 'fan', 'FAN14G1545' => 'fan', 'FAN14G3924' => 'fan', 'FAN14G4228' => 'fan', 'FAN14G4816' => 'fan', 'FAN17G0957' => 'fan', 'FAN18G2392' => 'fan', 'FAN18G2491' => 'fan', 'FAN18G2503' => 'fan', 'FAN19G1477' => 'fan', 'FAN20G0667' => 'fan', 'FvH4_2g05471' => 'fve', 'FvH4_3g44040' => 'fve', 'FvH4_4g23350' => 'fve', 'FvH4_4g28500' => 'fve', 'FvH4_5g28230' => 'fve', 'FvH4_6g08110' => 'fve', 'FvH4_6g40584' => 'fve', 'FvH4_6g40710' => 'fve', 'FvH4_6g52720' => 'fve', 'FvH4_7g28030' => 'fve', 'Glyma.02G096800' => 'gma', 'Glyma.03G229400' => 'gma', 'Glyma.07G013800' => 'gma', 'Glyma.08G198300' => 'gma', 'Glyma.08G199000' => 'gma', 'Glyma.16G063200' => 'gma', 'Glyma.18G284600' => 'gma', 'Glyma.19G077300' => 'gma', 'Glyma.19G082300' => 'gma', 'Glyma.19G226700' => 'gma', 'Gohir.A01G022700' => 'ghi', 'Gohir.A03G149400' => 'ghi', 'Gohir.A05G341600' => 'ghi', 'Gohir.A07G225800' => 'ghi', 'Gohir.A09G033500' => 'ghi', 'Gohir.A11G149300' => 'ghi', 'Gohir.A11G274800' => 'ghi', 'Gohir.D01G020700' => 'ghi', 'Gohir.D02G172300' => 'ghi', 'Gohir.D04G079700' => 'ghi', 'Gohir.D07G233000' => 'ghi', 'Gohir.D09G033700' => 'ghi', 'Gohir.D11G156300' => 'ghi', 'Gohir.D11G285000' => 'ghi', 'Gorai.001G268300' => 'gra', 'Gorai.002G023200' => 'gra', 'Gorai.005G194000' => 'gra', 'Gorai.006G038700' => 'gra', 'Gorai.007G166500' => 'gra', 'Gorai.007G308400' => 'gra', 'Gorai.012G089700' => 'gra', 'GSVIVG01000913001' => 'vvi', 'GSVIVG01001847001' => 'vvi', 'GSVIVG01030079001' => 'vvi', 'GSVIVG01030086001' => 'vvi', 'GSVIVG01031295001' => 'vvi', 'HanXRQChr02g0052871' => 'han', 'HanXRQChr04g0126561' => 'han', 'HanXRQChr11g0328021' => 'han', 'HanXRQChr15g0475151' => 'han', 'HanXRQChr15g0487071' => 'han', 'HanXRQChr17g0549541' => 'han', 'HanXRQChr17g0568251' => 'han', 'HanXRQChr17g0568901' => 'han', 'Haze_04024' => 'cav', 'Haze_12452' => 'cav', 'Haze_12625' => 'cav', 'Haze_12635' => 'cav', 'Haze_14816' => 'cav', 'Haze_27320' => 'cav', 'Haze_27428' => 'cav', 'Hma1.2p1_0210F.1_g089560' => 'hma', 'Hma1.2p1_0279F.1_g112280' => 'hma', 'Hma1.2p1_0545F.1_g175970' => 'hma', 'Hma1.2p1_1157F.1_g262360' => 'hma', 'HPP92_023599' => 'vpl', 'HPP92_024691' => 'vpl', 'HPP92_024692' => 'vpl', 'HPP92_024693' => 'vpl', 'HPP92_028600' => 'vpl', 'HPP92_028757' => 'vpl', 'HPP92_028758' => 'vpl', 'Hund01563' => 'sun', 'Hund01564' => 'sun', 'Hund03205' => 'sun', 'Hund06108' => 'sun', 'Hund21848' => 'sun', 'Hund25481' => 'sun', 'Lalb_Chr01g0013241' => 'lal', 'Lalb_Chr02g0157911' => 'lal', 'Lalb_Chr04g0258021' => 'lal', 'Lalb_Chr13g0292031' => 'lal', 'Lalb_Chr14g0363041' => 'lal', 'Lalb_Chr15g0077711' => 'lal', 'Lalb_Chr17g0336381' => 'lal', 'Lalb_Chr21g0317591' => 'lal', 'Lj1g0003550' => 'lja', 'Lj1g0007938' => 'lja', 'Lj1g0014131' => 'lja', 'Lj1g0014999' => 'lja', 'Lj2g0001557' => 'lja', 'Lj3g0000852' => 'lja', 'Lj3g0025523' => 'lja', 'Lj5A324T62' => 'lonja', 'Lj6A830T29' => 'lonja', 'Lj6g0016686' => 'lja', 'Lj6g0016714' => 'lja', 'Lj7C605G11' => 'lonja', 'Lj8A135T100' => 'lonja', 'Lsat_1_v5_gn_0_47540' => 'lsa', 'Lsat_1_v5_gn_4_261' => 'lsa', 'Lsat_1_v5_gn_7_97100' => 'lsa', 'Manes.09G179700' => 'mes', 'Manes.12G007900' => 'mes', 'Manes.13G008400' => 'mes', 'Manes.13G062300' => 'mes', 'Manes.15G156500' => 'mes', 'Manes.17G107200' => 'mes', 'Mapoly0009s0122' => 'mpo', 'Mapoly0052s0085' => 'mpo', 'Mapoly0067s0088' => 'mpo', 'MBI06_g43790_MAGBIO' => 'mbi', 'MBI11_g02876_MAGBIO' => 'mbi', 'MBI11_g24610_MAGBIO' => 'mbi', 'MBI11_g31857_MAGBIO' => 'mbi', 'MBI16_g09916_MAGBIO' => 'mbi', 'MBI16_g22133_MAGBIO' => 'mbi', 'MBI16_g47365_MAGBIO' => 'mbi', 'MBI16_g47366_MAGBIO' => 'mbi', 'MBI18_g09662_MAGBIO' => 'mbi', 'MCO03G418' => 'mco', 'MCO04G184' => 'mco', 'MCO11G724' => 'mco', 'MD04G1016000' => 'mdo', 'MD04G1189800' => 'mdo', 'MD09G1017200' => 'mdo', 'MD09G1126100' => 'mdo', 'MD13G1122800' => 'mdo', 'MD16G1123600' => 'mdo', 'MD17G1017900' => 'mdo', 'Medtr0275s0010' => 'mtr', 'Medtr0590s0010' => 'mtr', 'Medtr1034s0010' => 'mtr', 'Medtr4g085930' => 'mtr', 'Medtr6g022860' => 'mtr', 'Medtr7g022440' => 'mtr', 'Medtr7g037420' => 'mtr', 'Medtr7g037440' => 'mtr', 'Medtr7g111760' => 'mtr', 'Medtr8g015270' => 'mtr', 'MELO3C003280.2' => 'cme', 'MELO3C004159.2' => 'cme', 'MELO3C008985.2' => 'cme', 'Migut.H00061' => 'egut', 'Migut.K01008' => 'egut', 'Migut.K01437' => 'egut', 'Migut.M00044' => 'egut', 'MSTRG.14919' => 'ama', 'MSTRG.15552' => 'ama', 'MSTRG.24068' => 'ama', 'MSTRG.480' => 'ama', 'MSTRG.8023' => 'ama', 'Nitab4.5_0000709g0010' => 'nta', 'Nitab4.5_0000861g0020' => 'nta', 'Nitab4.5_0001701g0110' => 'nta', 'Nitab4.5_0001863g0080' => 'nta', 'Nitab4.5_0001867g0060' => 'nta', 'Nitab4.5_0002783g0080' => 'nta', 'Nitab4.5_0002783g0090' => 'nta', 'Nitab4.5_0005710g0040' => 'nta', 'Nitab4.5_0025212g0010' => 'nta', 'Nn1g03209' => 'nnu', 'Nn3g16392' => 'nnu', 'Nn3g16564' => 'nnu', 'Nn4g22437' => 'nnu', 'Nn4g25437' => 'nnu', 'Oeu001323.3' => 'oeu', 'Oeu011353.1' => 'oeu', 'Oeu012653.1' => 'oeu', 'Oeu034098.2' => 'oeu', 'Oeu041303.2' => 'oeu', 'Oeu043811.1' => 'oeu', 'Oeu046876.1' => 'oeu', 'Oeu048587.1' => 'oeu', 'Oeu058761.1' => 'oeu', 'Os02g0600400' => 'osa', 'Os03g0318500' => 'osa', 'Os03g0412800' => 'osa', 'Os04g0485300' => 'osa', 'Os07g0406300' => 'osa', 'Peaxi162Scf00128g01524' => 'pax', 'Peaxi162Scf00357g00525' => 'pax', 'Peaxi162Scf00420g00343' => 'pax', 'Peaxi162Scf00420g00346' => 'pax', 'Peaxi162Scf00802g00234' => 'pax', 'PGR031G2173' => 'pgr', 'PGR083G0783' => 'pgr', 'PGR102G1744' => 'pgr', 'PGR119G1557' => 'pgr', 'PGR142G0619' => 'pgr', 'PGR142G4440' => 'pgr', 'PGSC0003DMG400002750' => 'stu', 'PGSC0003DMG400010802' => 'stu', 'PGSC0003DMG400017394' => 'stu', 'PGSC0003DMG400020269' => 'stu', 'Phvul.001G223300' => 'pvu', 'Phvul.004G057000' => 'pvu', 'Phvul.008G016900' => 'pvu', 'Phvul.008G148700' => 'pvu', 'Phvul.010G143200' => 'pvu', 'Potri.001G059900' => 'ptr', 'Potri.001G337400' => 'ptr', 'Potri.003G168000' => 'ptr', 'Potri.005G005866' => 'ptr', 'Potri.013G005200' => 'ptr', 'Potri.014G166800' => 'ptr', 'Potri.017G070200' => 'ptr', 'Pp3c10_3450' => 'ppa', 'Pp3c11_23190' => 'ppa', 'Pp3c14_13300' => 'ppa', 'Pp3c14_2990' => 'ppa', 'Pp3c1_23260' => 'ppa', 'Pp3c20_10460' => 'ppa', 'Pp3c23_16910' => 'ppa', 'Pp3c24_8780' => 'ppa', 'Pp3c7_2490' => 'ppa', 'Pp3s46_190' => 'ppa', 'PRCOL_00001063' => 'pco', 'Prupe.1G222100' => 'ppe', 'Prupe.3G198600' => 'ppe', 'Prupe.3G300200' => 'ppe', 'Prupe.6G307600' => 'ppe', 'Psat1g084200' => 'psa', 'Psat3g014680' => 'psa', 'Psat3g169360' => 'psa', 'Psat3g187680' => 'psa', 'Psat4g195840' => 'psa', 'PSO017G1361' => 'pso', 'PSO017G2006' => 'pso', 'PSO017G2873' => 'pso', 'PSO017G5502' => 'pso', 'PSO170G0468' => 'pso', 'PSO478G1051' => 'pso', 'PSO478G4371' => 'pso', 'PSO478G4992' => 'pso', 'PSO782G1306' => 'pso', 'PSO782G4700' => 'pso', 'QL02p072852' => 'qlo', 'QL03p008786' => 'qlo', 'QL03p013038' => 'qlo', 'QL03p051574' => 'qlo', 'QL04p068420' => 'qlo', 'QL08p028061' => 'qlo', 'QL08p028073' => 'qlo', 'RcHm_v2.0_Chr2g0155901' => 'rch', 'RcHm_v2.0_Chr2g0156161' => 'rch', 'RcHm_v2.0_Chr2g0174311' => 'rch', 'RcHm_v2.0_Chr2g0174331' => 'rch', 'RcHm_v2.0_Chr3g0457961' => 'rch', 'RcHm_v2.0_Chr4g0429721' => 'rch', 'Rhsim06G0175900' => 'rsi', 'Rhsim10G0011000' => 'rsi', 'Rhsim11G0099300' => 'rsi', 'RhsimUnG0241400' => 'rsi', 'Sabra03G0123200' => 'sbr', 'Sabra05G0016300' => 'sbr', 'Sabra13G0004200' => 'sbr', 'Sabra14G0126800' => 'sbr', 'Sabra16G0218200' => 'sbr', 'SalBow1G0357' => 'sbo', 'SalBow1G2763' => 'sbo', 'SalBow2G2126' => 'sbo', 'SalBow2G2263' => 'sbo', 'SalBow7G2410' => 'sbo', 'SalBow7G4763' => 'sbo', 'SalBow8G2155' => 'sbo', 'Sc04g0010320' => 'sci', 'Sc06g0009890' => 'sci', 'Sc07g0004430' => 'sci', 'Sc16g0009260' => 'sci', 'Sed0002952' => 'sed', 'Sed0011336' => 'sed', 'Sed0016090' => 'sed', 'Sed0022509' => 'sed', 'Sed0028078' => 'sed', 'SEGI_01513' => 'sgi', 'SEGI_03359' => 'sgi', 'SEGI_10718' => 'sgi', 'SEGI_13470' => 'sgi', 'SEGI_26144' => 'sgi', 'SEGI_37610' => 'sgi', 'SEGI_38923' => 'sgi', 'SGA_v2.0_scaffold181G39688' => 'sas', 'SGA_v2.0_scaffold18G08238' => 'sas', 'SGA_v2.0_scaffold30G12397' => 'sas', 'SGA_v2.0_scaffold47G17552' => 'sas', 'SHI03865' => 'shi', 'SHI03867' => 'shi', 'SHI03868' => 'shi', 'SHI04191' => 'shi', 'SMO141G0107' => 'smo', 'SMO169G0107' => 'smo', 'SMO169G0220' => 'smo', 'SMO202G0017' => 'smo', 'SMO270G0088' => 'smo', 'SMO271G0021' => 'smo', 'SMO306G0037' => 'smo', 'Solyc01g100960.3' => 'sly', 'Solyc05g015950.3' => 'sly', 'Solyc07g045540.4' => 'sly', 'Sopen01g044420' => 'spe', 'Sopen02g038470' => 'spe', 'Sopen05g011980' => 'spe', 'Sopen07g024070' => 'spe', 'Sp1g08030' => 'spa', 'Sp1g23480' => 'spa', 'Sp2g16460' => 'spa', 'Sp6g30870' => 'spa', 'Sp7g01140' => 'spa', 'Sp7g06340' => 'spa', 'TAR365G1035' => 'tar', 'TAR371G0406' => 'tar', 'TAR371G0525' => 'tar', 'TAR371G0550' => 'tar', 'TAR371G1230' => 'tar', 'TAR374G1518' => 'tar', 'TAR626G1918' => 'tar', 'TAR629G0403' => 'tar', 'TAR629G0551' => 'tar', 'TAR629G2794' => 'tar', 'THA.LOC104805343' => 'tha', 'THA.LOC104807406' => 'tha', 'THA.LOC104810210' => 'tha', 'THA.LOC104816851' => 'tha', 'THA.LOC104823966' => 'tha', 'THA.LOC104825343' => 'tha', 'THA.LOC104826627' => 'tha', 'Thecc.01G195300' => 'tca', 'Thecc.02G201000' => 'tca', 'Thecc.04G027700' => 'tca', 'Thecc.05G327100' => 'tca', 'Thhalv10003851m.g' => 'esa', 'Thhalv10004014m.g' => 'esa', 'Thhalv10007053m.g' => 'esa', 'Thhalv10007147m.g' => 'esa', 'Thhalv10013032m.g' => 'esa', 'Thhalv10027727m.g' => 'esa', 'TPR.G1627' => 'tpr', 'TPR.G29002' => 'tpr', 'TPR.G2924' => 'tpr', 'TPR.G8746' => 'tpr', 'TPR.G9068' => 'tpr', 'TWI12G0049' => 'twi', 'TWI36G1230' => 'twi', 'TWI36G1322' => 'twi', 'TWI36G1484' => 'twi', 'TWI56G0469' => 'twi', 'unitig_22.g6395' => 'ugi', 'unitig_22.g6396' => 'ugi', 'unitig_744.g24366' => 'ugi', 'unitig_8.g3128' => 'ugi', 'vmacro01045' => 'vma', 'vmacro01592' => 'vma', 'vmacro05128' => 'vma', 'vmacro05925' => 'vma', 'vmacro12088' => 'vma', 'VMungo0331G0256' => 'vmu', 'VMungo0331G0845' => 'vmu', 'VMungo0464G0270' => 'vmu', 'VMungo1383G2909' => 'vmu', 'VMungo1383G3437' => 'vmu', 'Zm00001eb019890' => 'zma', 'Zm00001eb079220' => 'zma', 'Zm00001eb246350' => 'zma', 'Zm00001eb395630' => 'zma', 'Zm00001eb419510' => 'zma' ) $gf_id = 'HOM05D000918' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000918' ) $data_identifier = 'HOM05D000918' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 5, 'aag' => (int) 4, 'ach' => (int) 16, 'amhyb' => (int) 4, 'aly' => (int) 7, 'aox' => (int) 8, 'arhy' => (int) 22, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 18, 'bol' => (int) 9, 'bra' => (int) 9, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 4, 'ccl' => (int) 2, 'cil' => (int) 7, 'cla' => (int) 3, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 6, 'din' => (int) 9, 'dzi' => (int) 6, 'eca' => (int) 4, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 29, 'fve' => (int) 10, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lja' => (int) 9, 'lonja' => (int) 4, 'lsa' => (int) 3, 'mes' => (int) 6, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 10, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 9, 'nnu' => (int) 5, 'oeu' => (int) 9, 'osa' => (int) 5, 'pax' => (int) 5, 'pgr' => (int) 6, 'stu' => (int) 4, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 10, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 5, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 7, 'sas' => (int) 4, 'shi' => (int) 4, 'smo' => (int) 7, 'sly' => (int) 3, 'spe' => (int) 4, 'spa' => (int) 6, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 5, 'zma' => (int) 5 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb419510' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1